In the Literature!

Soluble Screen

2020

  • Lynch ML, Dudek MF, Bowman SE. A Searchable Database of Crystallization Cocktails in the PDB: Analyzing the Chemical Condition Space. Patterns. 2020 https://doi.org/10.1016/j.patter.2020.100024
  • Stachowski TR, Snell ME, Snell EH. Structural insights into conformational switching in latency-associated peptide between transforming growth factor β-1 bound and unbound states. IUCrJ. 2020;7, 238-252.

  • Subedi S, Dinc I, Tran TX, Sharma D, Shrestha BR, Pusey ML, Aygün, RS. Visual-X2: interactive visualization and analysis tool for protein crystallization. Network Modeling Analysis in Health Informatics and Bioinformatics. 2020; 9, 15.

2019

  • Abrahams, GJ, Janet N. BLASTing away preconceptions in crystallization trials. Acta Crystallographica Section F: Structural Biology Communications. 2019; 75.

  • Costa DM, Gómez SV, de Araújo SS, Pereira MS, Alves RB, Favaro DC, Hengge AC, Nagem RA, Brandão TA. Catalytic mechanism for the conversion of salicylate into catechol by the flavin-dependent monooxygenase salicylate hydroxylase. International journal of biological macromolecules. 2019; 129, 588.
  • Hou H, Shi M, Hu SY, Ahmad F, Zhang B, Chen ZH, Yin DC. A systematic comparison of sitting and hanging-drop crystallization using traditional and cross-diffusion microbatch crystallization plates. Journal of Crystal Growth. 2019; 521, 1.
  • Mydy, LS, Cristobal, JR, Katigbak, RD, Bauer, P, Reyes, AC, Kamerlin, SCL, Richard, JP, Gulick, AM. Human Glycerol 3-Phosphate Dehydrogenase: X-ray Crystal Structures That Guide the Interpretation of Mutagenesis Studies. 2019; 58, 1061.
  • Neupane DP, Fullam SH, Chacón KN, Yukl ET. Crystal structures of AztD provide mechanistic insights into direct zinc transfer between proteins. Communications biology. 2019; 2, 1.
  • Yang H, Huang L, Zhang F, Karde V, Yang Z, Heng JY. Gravity on Crystallization of Lysozyme: Slower or Faster? Crystal Growth & Design. 2019; 19, 7402.

2018

  • Andreo-Vidal, A, Mamounis, KJ, Sehanobish, E, Avalos, D, Campillo-Brocal, JC, Sanchez-Amat, A, Yukl, ET, Davidson, VL. Structure and enzymatic properties of an unusual cysteine tryptophylquinone-dependent glycine oxidase from Pseudoalteromonas luteoviolacea. Biochemistry. 2018; 57, 1155.
  • Bailey DC, Alexander E, Rice MR, Drake EJ, Mydy LS, Aldrich CC, Gulick AM. Structural and functional delineation of aerobactin biosynthesis in hypervirulent Klebsiella pneumoniae. Journal of Biological Chemistry. 2018; 293, 7841.
  • Bruno AE, Charbonneau P, Newman J, Snell EH, So DR, Vanhoucke V, Watkins CJ, Williams S, Wilson J. Classification of crystallization outcomes using deep convolutional neural networks. PLOS One. 2018; 13, e0198883.
  • Gorrec F, Löwe J. Automated Protocols for Macromolecular Crystallization at the MRC Laboratory of Molecular Biology. JoVE (Journal of Visualized Experiments). 2018; e55790.
  • Krishnan, N, Bonham, CA, Rus, IA, Shrestha, OK, Gauss, CM, Haque, A, Tocilj, A, Joshua-Tor, L, Tonks, NK. Harnessing insulin-and leptin-induced oxidation of PTP1B for therapeutic development. Nature Communications. 2018; 9, 283.
  • Lattman EE, Grant TD, Snell EH. Biological Small Angle Scattering: Theory and Practice. Oxford University Press; 2018.
  • Moremen KW, Ramiah A, Stuart M, Steel J, Meng L, Forouhar F, Moniz HA, Gahlay G, Gao Z, Chapla D, Wang S, Yang, J-Y, Prabhakar, PK, Johnson, R, dela Rosa, M, Geisler, C, Nairn, A, Seetharaman, J, Wu, S-C, Tong, L, Gilbert, HJ, LaBaer, J, Jarvis, DL. Expression system for structural and functional studies of human glycosylation enzymes. Nature Chemical Biology. 2018; 14, 156.
  • Ran, Y, Zheng, A, Thibodeau, PH. Structural analysis reveals pathomechanisms associated with pseudoxanthoma elasticum-causing mutations in the ABCC6 transporter. Journal of Biological Chemistry. 2018; 293, 15855.
  • Wlodarchak, N, Teachout, N, Beczkiewicz, J, Rocknow, R, Schaenzer, AJ, Satyshur, K, Pavelka, M, Zuercher, W, Drewry, D, Sauer, J-D, Striker, R. In silico screen and structural analysis identifies bacterial kinase inhibitors with act with β-lactams to inhibit mycobacterial growth. Molecular Pharmaceutics. 2018; 15, 5410.

2017

  • Bremer PT, Pellett S, Carolan JP, Tepp WH, Eubanks LM, Allen KN, Johnson EA, Janda KD. Metal ions effectively ablate the action of botulinum neurotoxin A. Journal of the American Chemical Society. 2017; 139, 7264.
  • González-Ramírez LA, Ruiz-Martínez CR, Estremera-Andújar RA, Nieves-Marrero CA, García-Caballero A, Gavira JA, López-Garriga J, García-Ruiz JM. Efficient Screening Methodology for Protein Crystallization Based on the Counter-Diffusion Technique. Crystal Growth & Design. 2017; 17, 6780-6.

  • Guan R, Aiyer S, Cote ML, Xiao R, Jiang M, Acton TB, Roth MJ, Montelione GT. X‐ray crystal structure of the N‐terminal region of Moloney murine leukemia virus integrase and its implications for viral DNA recognition. Proteins: Structure, Function, and Bioinformatics. 2017; 85, 647.
  • Kgosisejo O, Chen JA, Grochulski P, Tanaka T. Crystallographic structure of recombinant Lactococcus lactis prolidase to support proposed structure-function relationships. Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics. 2017; 1865, 473.
  • Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao, R, Sankaran, B, Zwart, PH, Montelione, GT, Baker, D. Principles for designing proteins with cavities formed by β curved sheets. Science. 2017; 355, 201.
  • Mayer C. X-Ray Diffraction in Biology: How Can We See DNA and Proteins in Three Dimensions? X-ray Scattering. 2017, 207.

  • McPherson A. Protein crystallization. In Protein Crystallography. Humana Press, New York, NY; 2017, 17-50.

  • Pusey ML, Aygün RS. Introduction to Protein Crystallization. In Data Analytics for Protein Crystallization. Springer, Cham; 2017, 1-20.

  • Pusey ML, Aygün RS. Visualization. In Data Analytics for Protein Crystallization. Springer, Cham; 2017, 199-210.

 

Membrane Screen

2019

  • Qin W, Xie SX, Zhang J, Zhao D, He CX, Li HJ, Xing L, Li PQ, Jin X, Yin DC, Cao HL. An Analysis on Commercial Screening Kits and Chemical Components in Biomacromolecular Crystallization Screening. Crystal Research and Technology. 2019.

2018

  • Ray LC, Das D, Entova S, Lukose V, Lynch AJ, Imperiali B, Allen KN. Membrane association of monotopic phosphoglycosyl transferase underpins function. Nature Chemical Biology. 2018; 14, 538.

2017

  • Bonneté F, Loll PJ. Characterization of New Detergents and Detergent Mimetics by Scattering Techniques for Membrane Protein Crystallization. In Membrane Protein Structure and Function Characterization 2017 (pp. 169-193). Humana Press, New York, NY.
  • Stetsenko A, Guskov A. An overview of the top ten detergents used for membrane protein crystallization. Crystals. 2017; 7, 197.